MISHIMA

Method for Inferring Sequence History In Terms of Multiple Alignment
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Recent changes

June 2, 2008
  • Added options to filter the sequences by length and/or GC content.
May 22, 2008
  • You can select a subset of sequences to align. First you submit the complete set of sequences, then you see the names and properties and can choose which sequences should be aligned.
  • Fixed disappearing first character in the sequence name.
May 20, 2008
  • You can check sequence length, ATCG-count, number of other IUPAC codes, number of N, number of gaps, and GC-content before starting the alignment.
May 16, 2008
  • MISHIMA alignment submission is now a two step process. In the first step you submit the sequences, in the second step you specify the alignment options. This is useful because you can see some information about the submitted sequences before starting the alignment.
  • Added 'dot' option to CLUSTAL W and MISHIMA alignment formats. When checked, alignment positions identical to the first sequence (or to the consensus sequence if consensus option was selected) are shown as '.' (dot, full stop).
May 14, 2008
  • Added consensus sequence to CLUSTAL W format alignment.
May 13, 2008
  • Added consensus option for MISHIMA format alignment.
  • Added option to show coordinates of each sequence in the alignment output (MISHIMA format only).
February 18, 2008
Added link to the MISHIMA alignment server.
Created by MISHIMA Contributors